Minirosetta has been updated to version 3.48. This update includes a number of bug fixes in our hybridize protocol, a new rotamer based centroid fragment sampling protocol, and also an improved energy function. Please post issues/bugs here.

Calculation Error in File
21.10.2013 20:54:56 | rosetta@home | Output file endo_ae__Soc368.015_SAVE_ALL_OUT_IGNORE_THE_REST_95920_691_0_0 for task endo_ae__Soc368.015_SAVE_ALL_OUT_IGNORE_THE_REST_95920_691_0 absent

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Now "endo_ac" screensaver is ok!! :-)

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This new version seems to be very stable.
News about scientific side of the app? Run ok?

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Task ID 616996009
Name r769_nohelix1_1LW-6HA-3LX-11HA-2LX_0016_0319_0044_0001_1221_fold_SAVE_ALL_OUT_104983_5591_0

https://boinc.bakerlab.org/result.php?resultid=616996009


This task died before it had a chance to start.

<core_client_version>7.2.28</core_client_version>
<![CDATA[
<message>
Maximum elapsed time exceeded
</message>

No firewall messages as the partition for all Boinc programs is excluded.
So something is buggy in the software.

Rosetta keeps stopping doing work every few seconds. Plz, fix this since the update.

Tom Zolotor

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Rosetta keeps stopping doing work every few seconds. Plz, fix this since the update.

Tom Zolotor

Are you sure the problem started when Rosetta was updated at the start of October?

Do you have BOINC set to do work when the computer is in use, or have you unchecked "leave applications in memory when suspended"?

I doubt it's a BOINC issue, but 7.2.28 is the stable version so you could try updating to that too.

D

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I don't usually post complaints about credit scores, but this particular one seems different to others:

31_input_0001_no_lig_fragments_fold_SAVE_ALL_OUT_108256_3302_0

======================================================
DONE :: 1 starting structures 28555.7 cpu seconds
This process generated 24 decoys from 24 attempts
======================================================

This part's fine, but another one comes up later:

======================================================
DONE :: 1 starting structures 28237 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

Then

Validate state Valid
Claimed credit 180.538587796693
Granted credit 6.80219874455716
application version 3.48

It seems to have only awarded for the later 1 decoy and not for the earlier 24 decoys.

I can't say if there was some interruption in the job run, but it starts initialising "2013-12-11 9:23:19" and then second time around "2013-12-15 5:51: 9".

I did return from a few days away to find my system had hung and needing a reboot, but don't get why it seemed to report fully the first time round, then run and report a second time. Any ideas?

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Crash dump with this result: https://boinc.bakerlab.org/rosetta/result.php?resultid=624166808

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627055893
This wu restart every 20/30 seconds and, at the end, this error:

ERROR: Cannot open PDB file "y042.pdb.gz"
ERROR:: Exit from: ......srccoreimport_poseimport_pose.cc line: 218
[2013-12-31 18:35:12:] :: BOINC:: Initializing ... ok.
[2013-12-31 18:35:12:] :: BOINC :: boinc_init()

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Another crash:

https://boinc.bakerlab.org/result.php?resultid=631776446

Do you guys care about these? I'm seeing a few assertions with my results as well...

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638287613
638287644

Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_b14204d.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_V1_dock4_S_00001_0000895_0_0001.AB_DkTx_part1.model3.re_chain_060_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
error - tag names do not match! (Possibly due to unclosed tag.) stage2 != ddg_score
# cpu_run_time_pref: 7200

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Getting a lot of these tasks erring out with the same error.

V1_dock4_S_00001_0000525_0_0001.AB_DkTx_part1.model2.re_chain_180_SAVE_ALL_OUT_IGNORE_THE_REST_138660_2_1


error - tag names do not match! (Possibly due to unclosed tag.) stage2 != ddg_score

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Task 638918818 (ActCys_native_1iu8_idealize_y008_010_141286_3_0) failed

Watchdog active.
Starting work on structure: _00001

ERROR: [ERROR] invalid kill type for kill_hairpins. ANTI or PARA, is required.
ERROR:: Exit from: src/core/scoring/SS_Killhairpins_Info.cc line: 379
std::cerr: Exception was thrown:


[ERROR] EXCN_utility_exit has been thrown from: src/core/scoring/SS_Killhairpins_Info.cc line: 379
ERROR: [ERROR] invalid kill type for kill_hairpins. ANTI or PARA, is required.


</stderr_txt>
]]>

Work unit 583729340 crashed on both computers it ran on including mine. It was running Minirosetta 3.48 on both computers.