Rosetta is not playing nice with my other projects.

Message boards : Number crunching : Rosetta is not playing nice with my other projects.

To post messages, you must log in.

AuthorMessage
GrimJack

Send message
Joined: 12 Jan 08
Posts: 3
Credit: 2,234,692
RAC: 0
Message 89673 - Posted: 2 Oct 2018, 7:27:59 UTC

If I leave things normal, Rosetta has all the task slots taken up and Einstein seems to wait for ever to get a slot. I set resource share to 50 w/Einstein at 100 to no avail. Rather than go in and suspend the Rosetta tasks, I have taken to setting Rosetta to 'no new tasks' to give Einstein some run time. I really would prefer not to give up and remove Rosetta like I had to do with the Climate program. Is there something I can do to balance the programs task-sharing?
ID: 89673 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
mmonnin

Send message
Joined: 2 Jun 16
Posts: 59
Credit: 24,222,307
RAC: 83,030
Message 89677 - Posted: 2 Oct 2018, 13:26:40 UTC

Adding another project to a computer will make BM try to catch up and run the new project more until it reaches the given resource share ratio. You can let it go and it will work itself out in the long run or manually adjust R@H lower for now and gradually make it our desired ratio.
ID: 89677 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Mod.Sense
Volunteer moderator

Send message
Joined: 22 Aug 06
Posts: 4018
Credit: 0
RAC: 0
Message 89681 - Posted: 2 Oct 2018, 23:35:33 UTC

BOINC Manager controls which tasks are running. It is because R@h is newly added that BOINC Manager is running more of it. The same thing (new project appearing to be too aggressive) happens to the R@h user that later adds Einstein.

It will take a day or so to settle in. The best approach is to let BOINC Manager run without trying to manually force it to do something differently. Otherwise it is left trying to adapt to a constantly changing set of goals.

The resource shares used in BOINC Manager should be examined over the course of a day or a week, not the course of an afternoon.
Rosetta Moderator: Mod.Sense
ID: 89681 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
rjs5

Send message
Joined: 22 Nov 10
Posts: 273
Credit: 23,054,272
RAC: 8,196
Message 89682 - Posted: 3 Oct 2018, 1:09:55 UTC - in response to Message 89673.  

BOINC averages the number of WU over a period of time. When you add a new project, it will try to crunch the job mix to MEET the the WU mix defined. I think they balance on the number of WU and not on CREDITS. If you have 2 projects equally weighted, BOINC will try to match the number of WU.

A couple things you can use to get stable faster.
1. Select the shorter 1 hour Rosetta WU until it stabilizes. You will complete more WU more quickly.
2. Change the default 10 day window for calculating averages so the window is shorter.


<rec_half_life_days>X</rec_half_life_days>
A project's scheduling priority is determined by its estimated credit in the last X days. Default is 10; set it larger if you run long high-priority jobs.
ID: 89682 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
mmonnin

Send message
Joined: 2 Jun 16
Posts: 59
Credit: 24,222,307
RAC: 83,030
Message 89684 - Posted: 3 Oct 2018, 15:03:39 UTC - in response to Message 89682.  

BOINC averages the number of WU over a period of time. When you add a new project, it will try to crunch the job mix to MEET the the WU mix defined. I think they balance on the number of WU and not on CREDITS. If you have 2 projects equally weighted, BOINC will try to match the number of WU.

A couple things you can use to get stable faster.
1. Select the shorter 1 hour Rosetta WU until it stabilizes. You will complete more WU more quickly.
2. Change the default 10 day window for calculating averages so the window is shorter.


<rec_half_life_days>X</rec_half_life_days>
A project's scheduling priority is determined by its estimated credit in the last X days. Default is 10; set it larger if you run long high-priority jobs.


BM should be scheduling by time, right? BM has no idea what credit will be. I would expect if R@H takes 1 hour and E@H takes 2 hours then 2 R@H tasks will run and 1 E@H will run as the resource share levels out. At that point a host's queue would have 2x R@H than E@H and run them 2:1 giving and equal resource share. Assuming the same share is given to each project.
ID: 89684 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
GrimJack

Send message
Joined: 12 Jan 08
Posts: 3
Credit: 2,234,692
RAC: 0
Message 89696 - Posted: 5 Oct 2018, 7:13:18 UTC - in response to Message 89684.  

I have over 260k work units with R@H this is not a new issue; but I will monitor the user averages rather than just look at the active task list. Maybe my random glance that always shows R@H hogging the CPU is not a valid test of how the 2 play together.
ID: 89696 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
mmonnin

Send message
Joined: 2 Jun 16
Posts: 59
Credit: 24,222,307
RAC: 83,030
Message 89698 - Posted: 5 Oct 2018, 14:03:18 UTC

BOINC Manager controls how many tasks are downloaded and which ones run. Project's don't work either each other or your PC. This is all controlled by BM.
ID: 89698 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
fcbrants
Avatar

Send message
Joined: 25 Mar 13
Posts: 13
Credit: 3,933,177
RAC: 0
Message 89836 - Posted: 4 Nov 2018, 19:42:23 UTC

I've noticed the same thing & it looks like it's due to Rosetta WU's having Very short deadlines. I'm running SETI & Rosetta - new WU's from Rosetta have a deadline of 11/7 (3 days from now), while the new SETI WU's have a deadline of 12/27 (~ < 2 months).

Do these Rosetta WU's Need to have a deadline that is very short?

Franko
ID: 89836 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Mod.Sense
Volunteer moderator

Send message
Joined: 22 Aug 06
Posts: 4018
Credit: 0
RAC: 0
Message 89855 - Posted: 8 Nov 2018, 17:27:56 UTC - in response to Message 89836.  


Do these Rosetta WU's Need to have a deadline that is very short?


Yes. R@h tasks have deadlines that reflect the needs of the project and the specific tasks. 3 days is the shortest deadline used by R@h at this point.
Rosetta Moderator: Mod.Sense
ID: 89855 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
fcbrants
Avatar

Send message
Joined: 25 Mar 13
Posts: 13
Credit: 3,933,177
RAC: 0
Message 89859 - Posted: 9 Nov 2018, 6:10:35 UTC - in response to Message 89855.  

Good to know, thanks!!

Franko


Do these Rosetta WU's Need to have a deadline that is very short?


Yes. R@h tasks have deadlines that reflect the needs of the project and the specific tasks. 3 days is the shortest deadline used by R@h at this point.
ID: 89859 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
marmot

Send message
Joined: 10 Nov 15
Posts: 17
Credit: 2,460,049
RAC: 751
Message 90356 - Posted: 15 Feb 2019, 15:18:50 UTC

Setting Rosetta's resource share to 0 has made it play nicer with my higher priority projects that will go days without any work then hit in bursts that forces the backup Rosetta WU's into 'waiting'.
Still have to delete some Rosetta when high priority project WU come in cause of the short Rosetta deadline.
ID: 90356 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote

Message boards : Number crunching : Rosetta is not playing nice with my other projects.



©2024 University of Washington
https://www.bakerlab.org